Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003883.1 Corchorus capsularis cultivar CVL-1 contig03891, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 731

Length: 1219
ACGTcount: A:0.33, C:0.11, G:0.09, T:0.47


Found at i:748 original size:25 final size:25

Alignment explanation


    Indices: 698--749  Score: 61
    Period size: 25  Copynumber: 2.1  Consensus size: 25

        688 AAAATATATT

                         *   *       
        698 CTTTTACAATTTTTTTAGAAATAAA
          1 CTTTTACAATTTTCTTACAAATAAA

                               *      
        723 CTTTTACAATTATTCTTACTAA-AAA
          1 CTTTTACAATT-TTCTTACAAATAAA

              
        748 CT
          1 CT

        750 CTATTTTATT


Statistics
Matches: 23,  Mismatches: 3, Indels: 2
        0.82            0.11        0.07

Matches are distributed among these distances:
  25   16  0.70
  26    7  0.30

ACGTcount: A:0.38, C:0.13, G:0.02, T:0.46


Consensus pattern (25 bp):   
CTTTTACAATTTTCTTACAAATAAA
Done.