Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003887.1 Corchorus capsularis cultivar CVL-1 contig03895, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4169
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.30

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:1266 original size:23 final size:23

Alignment explanation


    Indices: 1212--1267  Score: 64
    Period size: 21  Copynumber: 2.5  Consensus size: 23

       1202 GATCGTGGTG

                                    
       1212 AGGTGACCTCCCCGTTTGTGTCAA
          1 AGGTG-CCTCCCCGTTTGTGTCAA

                                    
       1236 AGG-G-CTCCCCGTTCT-TGTCAA
          1 AGGTGCCTCCCCGTT-TGTGTCAA

            *          
       1257 GGGTGCCTCCC
          1 AGGTGCCTCCC

       1268 TGCTCACGGC


Statistics
Matches: 28,  Mismatches: 1, Indels: 7
        0.78            0.03        0.19

Matches are distributed among these distances:
  21   17  0.61
  22    2  0.07
  23    6  0.21
  24    3  0.11

ACGTcount: A:0.12, C:0.34, G:0.27, T:0.27


Consensus pattern (23 bp):   
AGGTGCCTCCCCGTTTGTGTCAA
Done.