Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003890.1 Corchorus capsularis cultivar CVL-1 contig03898, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 784

Length: 1307
ACGTcount: A:0.36, C:0.12, G:0.11, T:0.41


Found at i:208 original size:24 final size:25

Alignment explanation


    Indices: 172--220  Score: 64
    Period size: 24  Copynumber: 2.0  Consensus size: 25

        162 TTTTTTCACG

                                     
        172 TTAAACCTCTTATTATCATA-ATTA
          1 TTAAACCTCTTATTATCATATATTA

                  * *       *        
        196 TTAAACTTTTTATTATTATATATTA
          1 TTAAACCTCTTATTATCATATATTA

        221 ATTATTATTA


Statistics
Matches: 21,  Mismatches: 3, Indels: 1
        0.84            0.12        0.04

Matches are distributed among these distances:
  24   17  0.81
  25    4  0.19

ACGTcount: A:0.37, C:0.10, G:0.00, T:0.53


Consensus pattern (25 bp):   
TTAAACCTCTTATTATCATATATTA
Done.