Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003891.1 Corchorus capsularis cultivar CVL-1 contig03899, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4814
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.34

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:2058 original size:33 final size:33

Alignment explanation


    Indices: 2033--2097  Score: 103
    Period size: 33  Copynumber: 2.0  Consensus size: 33

       2023 GCGGCCTATC

                         *                   
       2033 CATGGCAGAGCCGTCCTAGTGGGGCGGCTCCAT
          1 CATGGCAGAGCCGCCCTAGTGGGGCGGCTCCAT

             *                      *       
       2066 CGTGGCAGAGCCGCCCTAGTGGGGAGGCTCCA
          1 CATGGCAGAGCCGCCCTAGTGGGGCGGCTCCA

       2098 CCGTGACTAA


Statistics
Matches: 29,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  33   29  1.00

ACGTcount: A:0.15, C:0.31, G:0.38, T:0.15


Consensus pattern (33 bp):   
CATGGCAGAGCCGCCCTAGTGGGGCGGCTCCAT
Done.