Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003906.1 Corchorus capsularis cultivar CVL-1 contig03914, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 716

Length: 1194
ACGTcount: A:0.38, C:0.20, G:0.14, T:0.28


Found at i:330 original size:21 final size:21

Alignment explanation


    Indices: 304--344  Score: 73
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        294 GAATATTTTC

                                 
        304 ATCTGTACAGTAACAAATCTT
          1 ATCTGTACAGTAACAAATCTT

                   *            
        325 ATCTGTATAGTAACAAATCT
          1 ATCTGTACAGTAACAAATCT

        345 AACATATACA


Statistics
Matches: 19,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   19  1.00

ACGTcount: A:0.39, C:0.17, G:0.10, T:0.34


Consensus pattern (21 bp):   
ATCTGTACAGTAACAAATCTT

Found at i:357 original size:21 final size:21

Alignment explanation


    Indices: 309--359  Score: 59
    Period size: 21  Copynumber: 2.4  Consensus size: 21

        299 TTTTCATCTG

                             *  *
        309 TACAGTAACAAATCTTATCTG
          1 TACAGTAACAAATCTTAACTA

              *                   
        330 TATAGTAACAAATC-TAACATA
          1 TACAGTAACAAATCTTAAC-TA

                     
        351 TACAGTAAC
          1 TACAGTAAC

        360 CAATTTTACT


Statistics
Matches: 25,  Mismatches: 4, Indels: 2
        0.81            0.13        0.06

Matches are distributed among these distances:
  20    3  0.12
  21   22  0.88

ACGTcount: A:0.45, C:0.18, G:0.08, T:0.29


Consensus pattern (21 bp):   
TACAGTAACAAATCTTAACTA
Done.