Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003922.1 Corchorus capsularis cultivar CVL-1 contig03930, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 661

Length: 1102
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.34


Found at i:136 original size:12 final size:12

Alignment explanation


    Indices: 99--139  Score: 55
    Period size: 12  Copynumber: 3.4  Consensus size: 12

         89 TAGGATATTG

                        
         99 TATCTAAATCTA
          1 TATCTAAATCTA

            *     *     
        111 AATCTACATCTA
          1 TATCTAAATCTA

                     *  
        123 TATCTAAATTTA
          1 TATCTAAATCTA

                 
        135 TATCT
          1 TATCT

        140 GCATCTAAAC


Statistics
Matches: 24,  Mismatches: 5, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  12   24  1.00

ACGTcount: A:0.39, C:0.17, G:0.00, T:0.44


Consensus pattern (12 bp):   
TATCTAAATCTA

Found at i:139 original size:18 final size:18

Alignment explanation


    Indices: 99--139  Score: 55
    Period size: 18  Copynumber: 2.3  Consensus size: 18

         89 TAGGATATTG

                              
         99 TATCTAAATCTAAATCTA
          1 TATCTAAATCTAAATCTA

            *     *        *  
        117 CATCTATATCTAAATTTA
          1 TATCTAAATCTAAATCTA

                 
        135 TATCT
          1 TATCT

        140 GCATCTAAAC


Statistics
Matches: 19,  Mismatches: 4, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  18   19  1.00

ACGTcount: A:0.39, C:0.17, G:0.00, T:0.44


Consensus pattern (18 bp):   
TATCTAAATCTAAATCTA
Done.