Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003923.1 Corchorus capsularis cultivar CVL-1 contig03931, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 605

Length: 1009
ACGTcount: A:0.36, C:0.17, G:0.14, T:0.32

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:437 original size:16 final size:16

Alignment explanation


    Indices: 416--450  Score: 70
    Period size: 16  Copynumber: 2.2  Consensus size: 16

        406 ACAATTCAGA

                            
        416 AAGCAGAAAAGCTCTG
          1 AAGCAGAAAAGCTCTG

                            
        432 AAGCAGAAAAGCTCTG
          1 AAGCAGAAAAGCTCTG

               
        448 AAG
          1 AAG

        451 TATCTCAGAT


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   19  1.00

ACGTcount: A:0.46, C:0.17, G:0.26, T:0.11


Consensus pattern (16 bp):   
AAGCAGAAAAGCTCTG
Done.