Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003924.1 Corchorus capsularis cultivar CVL-1 contig03932, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 817

Length: 1363
ACGTcount: A:0.35, C:0.22, G:0.12, T:0.32


Found at i:674 original size:33 final size:33

Alignment explanation


    Indices: 631--727  Score: 95
    Period size: 33  Copynumber: 2.9  Consensus size: 33

        621 AATTAGCATC

                 *                      *    
        631 CAAAACAGATTTAGTATCATCACAAACATCACT
          1 CAAAATAGATTTAGTATCATCACAAACAACACT

            *              *    **   *       
        664 TAAAATAGATTTAGTGTCATTGCAAGCAACACT
          1 CAAAATAGATTTAGTATCATCACAAACAACACT

                *   *           **         
        697 CAAATTAGGTTTAGTATCATTGCAAACAACA
          1 CAAAATAGATTTAGTATCATCACAAACAACA

        728 TCTAAAACAC


Statistics
Matches: 52,  Mismatches: 12, Indels: 0
        0.81            0.19        0.00

Matches are distributed among these distances:
  33   52  1.00

ACGTcount: A:0.42, C:0.19, G:0.11, T:0.28


Consensus pattern (33 bp):   
CAAAATAGATTTAGTATCATCACAAACAACACT
Done.