Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003933.1 Corchorus capsularis cultivar CVL-1 contig03941, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 762

Length: 1271
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.33


Found at i:370 original size:15 final size:15

Alignment explanation


    Indices: 352--397  Score: 74
    Period size: 15  Copynumber: 3.1  Consensus size: 15

        342 GTTGGATGCA

                  *        
        352 GCTTGGGTTGATGTT
          1 GCTTGGTTTGATGTT

                       *   
        367 GCTTGGTTTGAGGTT
          1 GCTTGGTTTGATGTT

                           
        382 GCTTGGTTTGATGTT
          1 GCTTGGTTTGATGTT

             
        397 G
          1 G

        398 ATGCAGCTGC


Statistics
Matches: 28,  Mismatches: 3, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  15   28  1.00

ACGTcount: A:0.07, C:0.07, G:0.39, T:0.48


Consensus pattern (15 bp):   
GCTTGGTTTGATGTT
Done.