Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003936.1 Corchorus capsularis cultivar CVL-1 contig03944, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 14968
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.31


Found at i:11790 original size:18 final size:17

Alignment explanation


    Indices: 11763--11801  Score: 51
    Period size: 18  Copynumber: 2.2  Consensus size: 17

      11753 CACCCTTTTG

                 *       *    
      11763 CTTTTTTTTTTTGTTACC
          1 CTTTTATTTTTT-CTACC

                             
      11781 CTTTTATTTTTTCTACC
          1 CTTTTATTTTTTCTACC

                
      11798 CTTT
          1 CTTT

      11802 CGGACTACTC


Statistics
Matches: 19,  Mismatches: 2, Indels: 1
        0.86            0.09        0.05

Matches are distributed among these distances:
  17    8  0.42
  18   11  0.58

ACGTcount: A:0.08, C:0.21, G:0.03, T:0.69


Consensus pattern (17 bp):   
CTTTTATTTTTTCTACC

Found at i:14875 original size:2 final size:2

Alignment explanation


    Indices: 14868--14896  Score: 58
    Period size: 2  Copynumber: 14.5  Consensus size: 2

      14858 AACAATTTTA

                                                       
      14868 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A

      14897 AAGACACATA


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   27  1.00

ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48


Consensus pattern (2 bp):   
AT

Done.