Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003950.1 Corchorus capsularis cultivar CVL-1 contig03958, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 744

Length: 1241
ACGTcount: A:0.28, C:0.14, G:0.19, T:0.39


Found at i:204 original size:14 final size:15

Alignment explanation


    Indices: 176--204  Score: 51
    Period size: 15  Copynumber: 2.0  Consensus size: 15

        166 GTGTGAATTC

                           
        176 AAATTGATCTTTTGA
          1 AAATTGATCTTTTGA

                           
        191 AAATTGAT-TTTTGA
          1 AAATTGATCTTTTGA

        205 TTAACTTAAA


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  14    6  0.43
  15    8  0.57

ACGTcount: A:0.34, C:0.03, G:0.14, T:0.48


Consensus pattern (15 bp):   
AAATTGATCTTTTGA

Found at i:522 original size:19 final size:18

Alignment explanation


    Indices: 498--534  Score: 56
    Period size: 19  Copynumber: 2.0  Consensus size: 18

        488 TTGAAGATTT

                               
        498 CTTGAAGACAATTTGAAGA
          1 CTTGAAGACAA-TTGAAGA

                     *        
        517 CTTGAAGACCATTGAAGA
          1 CTTGAAGACAATTGAAGA

        535 ATTATTTCAA


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  18    7  0.41
  19   10  0.59

ACGTcount: A:0.41, C:0.14, G:0.22, T:0.24


Consensus pattern (18 bp):   
CTTGAAGACAATTGAAGA
Done.