Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003955.1 Corchorus capsularis cultivar CVL-1 contig03963, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 789

Length: 1315
ACGTcount: A:0.34, C:0.12, G:0.17, T:0.37

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:121 original size:21 final size:21

Alignment explanation


    Indices: 80--122  Score: 59
    Period size: 21  Copynumber: 2.0  Consensus size: 21

         70 GAATAGTGTG

                           *     
         80 GGTTATTCTTATTTTTAAGGT
          1 GGTTATTCTTATTTTCAAGGT

                *           *    
        101 GGTTGTTCTTATTTTCCAGGT
          1 GGTTATTCTTATTTTCAAGGT

             
        122 G
          1 G

        123 AAGTTCATTT


Statistics
Matches: 19,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  21   19  1.00

ACGTcount: A:0.14, C:0.09, G:0.23, T:0.53


Consensus pattern (21 bp):   
GGTTATTCTTATTTTCAAGGT
Done.