Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003960.1 Corchorus capsularis cultivar CVL-1 contig03968, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 634

Length: 1058
ACGTcount: A:0.35, C:0.14, G:0.09, T:0.42


Found at i:600 original size:19 final size:19

Alignment explanation


    Indices: 576--614  Score: 78
    Period size: 19  Copynumber: 2.1  Consensus size: 19

        566 CTAACTATAT

                               
        576 ATTTGTGTTAATAATAATC
          1 ATTTGTGTTAATAATAATC

                               
        595 ATTTGTGTTAATAATAATC
          1 ATTTGTGTTAATAATAATC

             
        614 A
          1 A

        615 CTATTTAATA


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   20  1.00

ACGTcount: A:0.38, C:0.05, G:0.10, T:0.46


Consensus pattern (19 bp):   
ATTTGTGTTAATAATAATC

Done.