Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003966.1 Corchorus capsularis cultivar CVL-1 contig03974, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 870

Length: 1451
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28


Found at i:258 original size:11 final size:11

Alignment explanation


    Indices: 242--282  Score: 66
    Period size: 11  Copynumber: 3.7  Consensus size: 11

        232 ATGTCTTATA

                       
        242 TATATTAAGAT
          1 TATATTAAGAT

                       
        253 TATATTAA-AT
          1 TATATTAAGAT

                        
        263 ATATATTAAGAT
          1 -TATATTAAGAT

                    
        275 TATATTAA
          1 TATATTAA

        283 AAATGAAAAA


Statistics
Matches: 28,  Mismatches: 0, Indels: 4
        0.88            0.00        0.12

Matches are distributed among these distances:
  10    2  0.07
  11   24  0.86
  12    2  0.07

ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46


Consensus pattern (11 bp):   
TATATTAAGAT

Found at i:267 original size:22 final size:22

Alignment explanation


    Indices: 239--283  Score: 90
    Period size: 22  Copynumber: 2.0  Consensus size: 22

        229 AGGATGTCTT

                                  
        239 ATATATATTAAGATTATATTAA
          1 ATATATATTAAGATTATATTAA

                                  
        261 ATATATATTAAGATTATATTAA
          1 ATATATATTAAGATTATATTAA

             
        283 A
          1 A

        284 AATGAAAAAG


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   23  1.00

ACGTcount: A:0.51, C:0.00, G:0.04, T:0.44


Consensus pattern (22 bp):   
ATATATATTAAGATTATATTAA
Done.