Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003968.1 Corchorus capsularis cultivar CVL-1 contig03976, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 659

Length: 1099
ACGTcount: A:0.29, C:0.14, G:0.19, T:0.38


Found at i:934 original size:25 final size:25

Alignment explanation


    Indices: 900--950  Score: 102
    Period size: 25  Copynumber: 2.0  Consensus size: 25

        890 AAAGACTTTA

                                     
        900 GGTTTTTGCAAGTAGATAGCAGAAG
          1 GGTTTTTGCAAGTAGATAGCAGAAG

                                     
        925 GGTTTTTGCAAGTAGATAGCAGAAG
          1 GGTTTTTGCAAGTAGATAGCAGAAG

             
        950 G
          1 G

        951 TGAGATCTCT


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   26  1.00

ACGTcount: A:0.31, C:0.08, G:0.33, T:0.27


Consensus pattern (25 bp):   
GGTTTTTGCAAGTAGATAGCAGAAG
Done.