Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003972.1 Corchorus capsularis cultivar CVL-1 contig03980, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 780

Length: 1301
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32


Found at i:760 original size:3 final size:3

Alignment explanation


    Indices: 752--797  Score: 85
    Period size: 3  Copynumber: 15.7  Consensus size: 3

        742 TTCATTTCCC

                                                                          
        752 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA -CA TC
          1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TC

        798 TTCCGTGAGC


Statistics
Matches: 42,  Mismatches: 0, Indels: 2
        0.95            0.00        0.05

Matches are distributed among these distances:
   2    2  0.05
   3   40  0.95

ACGTcount: A:0.33, C:0.35, G:0.00, T:0.33


Consensus pattern (3 bp):   
TCA

Found at i:1276 original size:12 final size:12

Alignment explanation


    Indices: 1259--1297  Score: 50
    Period size: 12  Copynumber: 3.6  Consensus size: 12

       1249 GTACAGATAT

                        
       1259 CGGATATATCGA
          1 CGGATATATCGA

                        
       1271 CGGATATATCGA
          1 CGGATATATCGA

                        
       1283 --G-T-TATCGA
          1 CGGATATATCGA

                   
       1291 CGGATAT
          1 CGGATAT

       1298 TTAA


Statistics
Matches: 23,  Mismatches: 0, Indels: 8
        0.74            0.00        0.26

Matches are distributed among these distances:
   8    6  0.26
   9    1  0.04
  10    2  0.09
  11    1  0.04
  12   13  0.57

ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28


Consensus pattern (12 bp):   
CGGATATATCGA
Done.