Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003976.1 Corchorus capsularis cultivar CVL-1 contig03984, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 624

Length: 1041
ACGTcount: A:0.40, C:0.17, G:0.14, T:0.29


Found at i:280 original size:40 final size:40

Alignment explanation


    Indices: 224--299  Score: 111
    Period size: 40  Copynumber: 1.9  Consensus size: 40

        214 GCAGAAACAG

                                                      
        224 AAAATAAAAATATTTTTTTTAAAGGGAAAAA-CGGAAAAAGA
          1 AAAATAAAAATATTTTTTTTAAA--GAAAAATCGGAAAAAGA

                 *                              
        265 AAAATTAAAAT-TTTTTTTTAAAGAAAAATCGGAAA
          1 AAAATAAAAATATTTTTTTTAAAGAAAAATCGGAAA

        300 CCCTAATTTT


Statistics
Matches: 33,  Mismatches: 1, Indels: 4
        0.87            0.03        0.11

Matches are distributed among these distances:
  38    6  0.18
  39    6  0.18
  40   11  0.33
  41   10  0.30

ACGTcount: A:0.57, C:0.03, G:0.12, T:0.29


Consensus pattern (40 bp):   
AAAATAAAAATATTTTTTTTAAAGAAAAATCGGAAAAAGA
Done.