Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01000398.1 Corchorus capsularis cultivar CVL-1 contig00398, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 8017
ACGTcount: A:0.28, C:0.21, G:0.16, T:0.35
Found at i:964 original size:25 final size:25
Alignment explanation
Indices: 933--1015 Score: 96
Period size: 25 Copynumber: 3.2 Consensus size: 25
923 TACCTTCTTC
933 TTTTACTACTTACCATTTTTACTCT
1 TTTTACTACTTACCATTTTTACTCT
*
958 TTTTACTGA-ATACCATTTTTACTCT
1 TTTTACT-ACTTACCATTTTTACTCT
*
983 TTTTACTACTGAATGCCATTTTTACTCT
1 TTTTACTACT---TACCATTTTTACTCT
1011 CTTTT
1 -TTTT
1016 TTTTTACTGA
Statistics
Matches: 49, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
24 1 0.02
25 29 0.59
26 1 0.02
28 14 0.29
29 4 0.08
ACGTcount: A:0.20, C:0.22, G:0.04, T:0.54
Consensus pattern (25 bp):
TTTTACTACTTACCATTTTTACTCT
Found at i:1001 original size:28 final size:27
Alignment explanation
Indices: 945--1052 Score: 130
Period size: 28 Copynumber: 3.9 Consensus size: 27
935 TTACTACTTA
*
945 CCATTTTTACTC-TTTT-TACTGAATA
1 CCATTTTTACTCTTTTTCTACTGAATG
970 CCATTTTTACTCTTTTTACTACTGAATG
1 CCATTTTTACTCTTTTT-CTACTGAATG
* *
998 CCATTTTTACTCTCTTTTTTTTTACTGATTG
1 CCATTTTTA--CTC--TTTTTCTACTGAATG
1029 CCATTTTTACTCTTTTTCTACTGA
1 CCATTTTTACTCTTTTTCTACTGA
1053 TTACTACTTT
Statistics
Matches: 72, Mismatches: 4, Indels: 12
0.82 0.05 0.14
Matches are distributed among these distances:
25 12 0.17
26 4 0.06
27 11 0.15
28 17 0.24
29 3 0.04
30 3 0.04
31 17 0.24
32 5 0.07
ACGTcount: A:0.19, C:0.21, G:0.06, T:0.55
Consensus pattern (27 bp):
CCATTTTTACTCTTTTTCTACTGAATG
Found at i:1024 original size:31 final size:31
Alignment explanation
Indices: 957--1045 Score: 114
Period size: 31 Copynumber: 3.0 Consensus size: 31
947 ATTTTTACTC
*
957 TTTTTACTGAATACCATTTTTA--CTC-TTT
1 TTTTTACTGAATGCCATTTTTACTCTCTTTT
**
985 TTACTACTGAATGCCATTTTTACTCTCTTTT
1 TTTTTACTGAATGCCATTTTTACTCTCTTTT
*
1016 TTTTTACTGATTGCCATTTTTACTCT-TTTT
1 TTTTTACTGAATGCCATTTTTACTCTCTTTT
1046 CTACTGATTA
Statistics
Matches: 52, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
28 19 0.37
30 7 0.13
31 26 0.50
ACGTcount: A:0.18, C:0.19, G:0.06, T:0.57
Consensus pattern (31 bp):
TTTTTACTGAATGCCATTTTTACTCTCTTTT
Found at i:1071 original size:21 final size:21
Alignment explanation
Indices: 1047--1092 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
1037 ACTCTTTTTC
1047 TACTGATTACTACTTT-CACTT
1 TACTGATTACTA-TTTACACTT
*
1068 TACTGATTACTATTTACTCTT
1 TACTGATTACTATTTACACTT
1089 TACT
1 TACT
1093 ATTTTACTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 3 0.13
21 20 0.87
ACGTcount: A:0.24, C:0.22, G:0.04, T:0.50
Consensus pattern (21 bp):
TACTGATTACTATTTACACTT
Found at i:1084 original size:7 final size:7
Alignment explanation
Indices: 1074--1556 Score: 101
Period size: 7 Copynumber: 67.3 Consensus size: 7
1064 ACTTTACTGA
1074 TTACTAT
1 TTACTAT
*
1081 TTACTCT
1 TTACTAT
1088 TTACTATT
1 TTACTA-T
*
1096 TTACTTT
1 TTACTAT
1103 TTACTGA-
1 TTACT-AT
*
1110 TTACTCT
1 TTACTAT
*
1117 TTACTTT
1 TTACTAT
*
1124 TTACCAT
1 TTACTAT
1131 TTACTAT
1 TTACTAT
*
1138 TTACTAA
1 TTACTAT
*
1145 TTACTCT
1 TTACTAT
*
1152 TTACTTT
1 TTACTAT
**
1159 TTACCCT
1 TTACTAT
* *
1166 TCACTAA
1 TTACTAT
*
1173 TTACTCT
1 TTACTAT
**
1180 TTACTCC
1 TTACTAT
*
1187 TTACCATT
1 TTACTA-T
*
1195 TTACTCT
1 TTACTAT
*
1202 TT--GA-
1 TTACTAT
*
1206 TTACTCT
1 TTACTAT
*
1213 TTACTTT
1 TTACTAT
*
1220 TTACCATT
1 TTACTA-T
1228 TGTACTAT
1 T-TACTAT
*
1236 TTAATGA-
1 TTACT-AT
*
1243 TTACTCT
1 TTACTAT
*
1250 TTACTTT
1 TTACTAT
*
1257 TTACCATTT
1 TTA-C-TAT
1266 TTACTAT
1 TTACTAT
1273 TTACTGA-
1 TTACT-AT
*
1280 TTACTCT
1 TTACTAT
*
1287 TTACTTT
1 TTACTAT
1294 TTACTATT
1 TTACTA-T
1302 TTACTGA-
1 TTACT-AT
*
1309 TTACTCT
1 TTACTAT
*
1316 TTACTTT
1 TTACTAT
1323 TTACTGA-
1 TTACT-AT
* *
1330 TCACTCT
1 TTACTAT
1337 TTACTGA-
1 TTACT-AT
*
1344 TTACTCT
1 TTACTAT
** **
1351 TTTTTCC
1 TTACTAT
*
1358 TTACCAT
1 TTACTAT
* *
1365 ATAACTCT
1 -TTACTAT
**
1373 TTACCCT
1 TTACTAT
*
1380 TTACCATT
1 TTACTA-T
1388 TTACTAT
1 TTACTAT
1395 TTACTGA-
1 TTACT-AT
*
1402 TTACTCT
1 TTACTAT
*
1409 TTACTTT
1 TTACTAT
*
1416 TTACCATTT
1 TTA-C-TAT
1425 TTACTAT
1 TTACTAT
1432 TTATCTGA-
1 TTA-CT-AT
*
1440 TTACTCT
1 TTACTAT
1447 TTACT-T
1 TTACTAT
*
1453 CTTACCATT
1 -TTACTA-T
*
1462 TTACTCT
1 TTACTAT
* *
1469 TCACTAA
1 TTACTAT
*
1476 TTACTCT
1 TTACTAT
**
1483 TTACTCC
1 TTACTAT
*
1490 TTACCATT
1 TTACTA-T
*
1498 TTACTTT
1 TTACTAT
1505 TTACTGA-
1 TTACT-AT
*
1512 TTACTCT
1 TTACTAT
*
1519 TTACTCT
1 TTACTAT
*
1526 TTACTCTT
1 TTACT-AT
* *
1534 TTTCTCT
1 TTACTAT
*
1541 TTACTAA
1 TTACTAT
1548 TTACTAT
1 TTACTAT
1555 TT
1 TT
1557 TACTCTCTTG
Statistics
Matches: 343, Mismatches: 95, Indels: 76
0.67 0.18 0.15
Matches are distributed among these distances:
4 2 0.01
6 1 0.00
7 266 0.78
8 55 0.16
9 19 0.06
ACGTcount: A:0.21, C:0.22, G:0.02, T:0.54
Consensus pattern (7 bp):
TTACTAT
Found at i:1162 original size:14 final size:14
Alignment explanation
Indices: 1074--1683 Score: 144
Period size: 14 Copynumber: 42.1 Consensus size: 14
1064 ACTTTACTGA
*
1074 TTACTATTTACTCT
1 TTACTTTTTACTCT
*
1088 TTACTATTTTACTTT
1 TTACT-TTTTACTCT
**
1103 TTACTGATTACTCT
1 TTACTTTTTACTCT
1117 TTACTTTTTAC-CAT
1 TTACTTTTTACTC-T
* **
1131 TTACTATTTACTAA
1 TTACTTTTTACTCT
* *
1145 TTACTCTTTACTTT
1 TTACTTTTTACTCT
** * **
1159 TTACCCTTCACTAA
1 TTACTTTTTACTCT
* *
1173 TTACTCTTTACTCC
1 TTACTTTTTACTCT
*
1187 TTACCATTTTACTCT
1 TTA-CTTTTTACTCT
1202 TTGA----TTACTCT
1 TT-ACTTTTTACTCT
1213 TTACTTTTTAC-CATT
1 TTACTTTTTACTC--T
* * **
1228 TGTACTATTTAATGA
1 T-TACTTTTTACTCT
* *
1243 TTACTCTTTACTTT
1 TTACTTTTTACTCT
*
1257 TTACCATTTTTACTAT
1 TTA-C-TTTTTACTCT
**
1273 TTACTGATTACTCT
1 TTACTTTTTACTCT
*
1287 TTACTTTTTACTATT
1 TTACTTTTTACT-CT
**
1302 TTACTGATTACTCT
1 TTACTTTTTACTCT
**
1316 TTACTTTTTACTGA
1 TTACTTTTTACTCT
* * **
1330 TCACTCTTTACTGA
1 TTACTTTTTACTCT
* *
1344 TTACTCTTTT-TTCC
1 TTACT-TTTTACTCT
* * *
1358 TTACCATATAACTCT
1 TTA-CTTTTTACTCT
**
1373 TTACCCTTTAC-CATT
1 TTACTTTTTACTC--T
* **
1388 TTACTATTTACTGA
1 TTACTTTTTACTCT
* *
1402 TTACTCTTTACTTT
1 TTACTTTTTACTCT
*
1416 TTACCATTTTTACTAT
1 TTA-C-TTTTTACTCT
**
1432 TTATCTGATTACTCT
1 TTA-CTTTTTACTCT
*
1447 TTACTTCTTAC-CATT
1 TTACTTTTTACTC--T
* * **
1462 TTACTCTTCACTAA
1 TTACTTTTTACTCT
* *
1476 TTACTCTTTACTCC
1 TTACTTTTTACTCT
* *
1490 TTACCATTTTACTTT
1 TTA-CTTTTTACTCT
**
1505 TTACTGATTACTCT
1 TTACTTTTTACTCT
*
1519 TTACTCTTTACTCTT
1 TTACTTTTTACTC-T
* * **
1534 TTTCTCTTTACTAA
1 TTACTTTTTACTCT
1548 TTACTATTTTACTCT
1 TTACT-TTTTACTCT
*
1563 CTTGAATTTAATTAC-CATT
1 -TT-ACTTT--TTACTC--T
1582 TTACCGTTTTT-CTCT
1 TTA-C-TTTTTACTCT
**
1597 TTACTGATTACTCT
1 TTACTTTTTACTCT
1611 TTACTTTTTACTCT
1 TTACTTTTTACTCT
* * * **
1625 TTTCTCTGTACTGA
1 TTACTTTTTACTCT
* *
1639 TTACTCTATACTCT
1 TTACTTTTTACTCT
* *
1653 TTACCATTTTCCTCT
1 TTA-CTTTTTACTCT
**
1668 TTACTGATTACTCT
1 TTACTTTTTACTCT
1682 TT
1 TT
1684 TACTCACATT
Statistics
Matches: 429, Mismatches: 126, Indels: 82
0.67 0.20 0.13
Matches are distributed among these distances:
10 1 0.00
11 9 0.02
13 7 0.02
14 239 0.56
15 119 0.28
16 37 0.09
17 7 0.02
18 6 0.01
19 4 0.01
ACGTcount: A:0.21, C:0.22, G:0.03, T:0.54
Consensus pattern (14 bp):
TTACTTTTTACTCT
Found at i:1250 original size:37 final size:35
Alignment explanation
Indices: 1172--1306 Score: 184
Period size: 37 Copynumber: 3.8 Consensus size: 35
1162 CCCTTCACTA
** *
1172 ATTACTCTTTACTCCTTACCATTTTACT-CTT-TG
1 ATTACTCTTTACTTTTTACCATTTTACTATTTATG
1205 ATTACTCTTTACTTTTTACCATTTGTACTATTTAATG
1 ATTACTCTTTACTTTTTACCATTT-TACTATTT-ATG
1242 ATTACTCTTTACTTTTTACCATTTTTACTATTTACTG
1 ATTACTCTTTACTTTTTACCA-TTTTACTATTTA-TG
*
1279 ATTACTCTTTACTTTTTACTATTTTACT
1 ATTACTCTTTACTTTTTACCATTTTACT
1307 GATTACTCTT
Statistics
Matches: 92, Mismatches: 4, Indels: 9
0.88 0.04 0.09
Matches are distributed among these distances:
33 22 0.24
34 4 0.04
35 2 0.02
36 8 0.09
37 53 0.58
38 3 0.03
ACGTcount: A:0.21, C:0.20, G:0.03, T:0.56
Consensus pattern (35 bp):
ATTACTCTTTACTTTTTACCATTTTACTATTTATG
Found at i:1408 original size:36 final size:36
Alignment explanation
Indices: 1368--1552 Score: 205
Period size: 36 Copynumber: 5.1 Consensus size: 36
1358 TTACCATATA
1368 ACTCTTTACCCTTTACCATTTTACTATTTACTGATT
1 ACTCTTTACCCTTTACCATTTTACTATTTACTGATT
**
1404 ACTCTTTACTTTTTACCATTTTTACTATTTATCTGATT
1 ACTCTTTACCCTTTACCA-TTTTACTATTTA-CTGATT
* * * *
1442 ACTCTTTA-CTTCTTACCATTTTACTCTTCACTAATT
1 ACTCTTTACCCT-TTACCATTTTACTATTTACTGATT
*
1478 ACTCTTTACTCC-TTACCATTTTACTTTTTACTGATT
1 ACTCTTTAC-CCTTTACCATTTTACTATTTACTGATT
* * * *
1514 ACTCTTTACTCTTTACTC-TTTTTCTCTTTACTAATT
1 ACTCTTTACCCTTTAC-CATTTTACTATTTACTGATT
1550 ACT
1 ACT
1553 ATTTTACTCT
Statistics
Matches: 128, Mismatches: 14, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
35 1 0.01
36 81 0.63
37 25 0.20
38 21 0.16
ACGTcount: A:0.21, C:0.24, G:0.02, T:0.54
Consensus pattern (36 bp):
ACTCTTTACCCTTTACCATTTTACTATTTACTGATT
Found at i:1551 original size:22 final size:22
Alignment explanation
Indices: 1512--1562 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
1502 TTTTTACTGA
** *
1512 TTACTCTTTACTCTTTACTCTT
1 TTACTCTTTACTAATTACTATT
*
1534 TTTCTCTTTACTAATTACTATT
1 TTACTCTTTACTAATTACTATT
1556 TTACTCT
1 TTACTCT
1563 CTTGAATTTA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.18, C:0.24, G:0.00, T:0.59
Consensus pattern (22 bp):
TTACTCTTTACTAATTACTATT
Found at i:1614 original size:7 final size:7
Alignment explanation
Indices: 1593--1688 Score: 59
Period size: 7 Copynumber: 13.4 Consensus size: 7
1583 TACCGTTTTT
1593 CTCTTTA
1 CTCTTTA
**
1600 CTGATTA
1 CTCTTTA
1607 CTCTTTA
1 CTCTTTA
*
1614 CTTTTTA
1 CTCTTTA
*
1621 CTCTTTT
1 CTCTTTA
*
1628 CTCTGTA
1 CTCTTTA
**
1635 CTGATTA
1 CTCTTTA
*
1642 CTCTATA
1 CTCTTTA
1649 CTCTTTA
1 CTCTTTA
*
1656 C-CATTTTC
1 CTC--TTTA
1664 CTCTTTA
1 CTCTTTA
**
1671 CTGATTA
1 CTCTTTA
1678 CTCTTTTA
1 CTC-TTTA
1686 CTC
1 CTC
1689 ACATTTTACT
Statistics
Matches: 63, Mismatches: 22, Indels: 7
0.68 0.24 0.08
Matches are distributed among these distances:
6 1 0.02
7 51 0.81
8 10 0.16
9 1 0.02
ACGTcount: A:0.17, C:0.26, G:0.04, T:0.53
Consensus pattern (7 bp):
CTCTTTA
Found at i:1629 original size:35 final size:35
Alignment explanation
Indices: 1589--1688 Score: 139
Period size: 35 Copynumber: 2.8 Consensus size: 35
1579 ATTTTACCGT
*
1589 TTTTCTCTTTACTGATTACTCTTTACTTTTTACTC-
1 TTTTCTCTTTACTGATTACTCTTTACTCTTTAC-CA
* *
1624 TTTTCTCTGTACTGATTACTCTATACTCTTTACCA
1 TTTTCTCTTTACTGATTACTCTTTACTCTTTACCA
1659 TTTTCCTCTTTACTGATTACTCTTTTACTC
1 TTTT-CTCTTTACTGATTACTC-TTTACTC
1689 ACATTTTACT
Statistics
Matches: 57, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
34 1 0.02
35 34 0.60
36 16 0.28
37 6 0.11
ACGTcount: A:0.16, C:0.25, G:0.04, T:0.55
Consensus pattern (35 bp):
TTTTCTCTTTACTGATTACTCTTTACTCTTTACCA
Found at i:1755 original size:34 final size:34
Alignment explanation
Indices: 1692--1766 Score: 89
Period size: 34 Copynumber: 2.2 Consensus size: 34
1682 TTTACTCACA
* *
1692 TTTTACTCTTAATTACTAATTTGCAAATTACTTC
1 TTTTACTCTTAACTACTAATTTGCAAATTACCTC
* *
1726 TTTTACTCTTAACTACT-ATTTCTCTAATTACCTC
1 TTTTACTCTTAACTACTAATTT-GCAAATTACCTC
*
1760 TCTTACT
1 TTTTACT
1767 TTGACTCTCA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
33 4 0.11
34 31 0.89
ACGTcount: A:0.25, C:0.23, G:0.01, T:0.51
Consensus pattern (34 bp):
TTTTACTCTTAACTACTAATTTGCAAATTACCTC
Found at i:1892 original size:32 final size:32
Alignment explanation
Indices: 1824--1914 Score: 87
Period size: 32 Copynumber: 2.8 Consensus size: 32
1814 GATCAGTCCT
* * *
1824 TTTTACTTCCTTTCTTAATTGCTAATTAACCC
1 TTTTACTTCCTTTCTTAATTACCAATTAACAC
* *
1856 TTTTACTTCCTTTCTTAATTACCGATT-ACTAG
1 TTTTACTTCCTTTCTTAATTACCAATTAAC-AC
* *
1888 TTTTACTTTCC-CTCTTAATTATCAATT
1 TTTTAC-TTCCTTTCTTAATTACCAATT
1915 TACTGATTTA
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
31 2 0.04
32 43 0.88
33 4 0.08
ACGTcount: A:0.22, C:0.23, G:0.03, T:0.52
Consensus pattern (32 bp):
TTTTACTTCCTTTCTTAATTACCAATTAACAC
Found at i:2012 original size:80 final size:80
Alignment explanation
Indices: 1879--2058 Score: 263
Period size: 80 Copynumber: 2.2 Consensus size: 80
1869 CTTAATTACC
* * * *
1879 GATTACTAGTTTTACTTTCC-CTCTTAATTATCAATTTACTGATTTATCCCTTTACTTTGACTCT
1 GATTACTACTTTTGC-TTCCTCTCTTAATTATCAATTTACTGATTAATCCCTTTACCTTGACTCT
1943 TAATTACTGATCTACT
65 TAATTACTGATCTACT
* * * *
1959 GATTACTACTTTTGCTTCCTCTTTTAATTATGAGTTTACTGATTAATCCCTTTACCTTGGCTCTT
1 GATTACTACTTTTGCTTCCTCTCTTAATTATCAATTTACTGATTAATCCCTTTACCTTGACTCTT
*
2024 AATTACTGATTTACT
66 AATTACTGATCTACT
2039 GATTACTACTTTTGCTTCCT
1 GATTACTACTTTTGCTTCCT
2059 TACTCCTTTT
Statistics
Matches: 90, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
79 4 0.04
80 86 0.96
ACGTcount: A:0.22, C:0.21, G:0.08, T:0.49
Consensus pattern (80 bp):
GATTACTACTTTTGCTTCCTCTCTTAATTATCAATTTACTGATTAATCCCTTTACCTTGACTCTT
AATTACTGATCTACT
Found at i:2043 original size:40 final size:39
Alignment explanation
Indices: 1899--2043 Score: 132
Period size: 40 Copynumber: 3.6 Consensus size: 39
1889 TTTACTTTCC
* * *
1899 CTCTTAATTATCAATTTACTGATTTATCCCTTTACTTTGA
1 CTCTTAATTAT-GATTTACTGATTAATCCCTTTACCTTGA
* * * ** *
1939 CTCTTAATTACTGATCTACTGATTACT-ACTTTTGCTT-C
1 CTCTTAATTA-TGATTTACTGATTAATCCCTTTACCTTGA
*
1977 CTCTTTTAATTATGAGTTTACTGATTAATCCCTTTACCTTGG
1 CTC--TTAATTATGA-TTTACTGATTAATCCCTTTACCTTGA
2019 CTCTTAATTACTGATTTACTGATTA
1 CTCTTAATTA-TGATTTACTGATTA
2044 CTACTTTTGC
Statistics
Matches: 83, Mismatches: 15, Indels: 14
0.74 0.13 0.12
Matches are distributed among these distances:
38 3 0.04
39 9 0.11
40 57 0.69
41 11 0.13
42 3 0.04
ACGTcount: A:0.23, C:0.20, G:0.08, T:0.48
Consensus pattern (39 bp):
CTCTTAATTATGATTTACTGATTAATCCCTTTACCTTGA
Found at i:6118 original size:2 final size:2
Alignment explanation
Indices: 6111--6136 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
6101 TGAAAAGAAA
6111 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
6137 GAAAAATATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6766 original size:31 final size:31
Alignment explanation
Indices: 6725--6858 Score: 171
Period size: 31 Copynumber: 4.4 Consensus size: 31
6715 GGTTTTCAAT
6725 AGCAGATCCTCGACAAACAAAGCTCGTTGCC
1 AGCAGATCCTCGACAAACAAAGCTCGTTGCC
* *
6756 AGCAGGTCCTCGAAAAACAAAGCTCGTTGCC
1 AGCAGATCCTCGACAAACAAAGCTCGTTGCC
* * *
6787 AGCAGATCCTCGACAAATAAAGCACGTTACC
1 AGCAGATCCTCGACAAACAAAGCTCGTTGCC
* * * **
6818 AACAAATCCTCCACAAGTAAAGCTCGTTGCC
1 AGCAGATCCTCGACAAACAAAGCTCGTTGCC
6849 AGCAGA-CCTC
1 AGCAGATCCTC
6859 CAATGACGAG
Statistics
Matches: 88, Mismatches: 15, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
30 4 0.05
31 84 0.95
ACGTcount: A:0.34, C:0.31, G:0.18, T:0.16
Consensus pattern (31 bp):
AGCAGATCCTCGACAAACAAAGCTCGTTGCC
Done.