Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003983.1 Corchorus capsularis cultivar CVL-1 contig03991, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 738

Length: 1230
ACGTcount: A:0.34, C:0.22, G:0.13, T:0.31


Found at i:30 original size:18 final size:18

Alignment explanation


    Indices: 7--41  Score: 61
    Period size: 18  Copynumber: 1.9  Consensus size: 18

          1 GTTTGT

                    *         
          7 GCCTGTTGTTGTTGCTGC
          1 GCCTGTTGCTGTTGCTGC

                             
         25 GCCTGTTGCTGTTGCTG
          1 GCCTGTTGCTGTTGCTG

         42 TTGCAATAGT


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  18   16  1.00

ACGTcount: A:0.00, C:0.23, G:0.34, T:0.43


Consensus pattern (18 bp):   
GCCTGTTGCTGTTGCTGC
Done.