Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003989.1 Corchorus capsularis cultivar CVL-1 contig03997, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 689

Length: 1149
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.33


Found at i:623 original size:18 final size:18

Alignment explanation


    Indices: 582--616  Score: 52
    Period size: 18  Copynumber: 1.9  Consensus size: 18

        572 TGCGGGTTAC

                *             
        582 AATGATAATGCAATGTCG
          1 AATGCTAATGCAATGTCG

                      *      
        600 AATGCTAATGTAATGTC
          1 AATGCTAATGCAATGTC

        617 ATATGCTGAT


Statistics
Matches: 15,  Mismatches: 2, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  18   15  1.00

ACGTcount: A:0.37, C:0.11, G:0.20, T:0.31


Consensus pattern (18 bp):   
AATGCTAATGCAATGTCG
Done.