Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003991.1 Corchorus capsularis cultivar CVL-1 contig03999, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1727
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.34


Found at i:199 original size:21 final size:21

Alignment explanation


    Indices: 175--218  Score: 88
    Period size: 21  Copynumber: 2.1  Consensus size: 21

        165 AACATAATTT

                                 
        175 CTAATGCGCGAAATGGACTAA
          1 CTAATGCGCGAAATGGACTAA

                                 
        196 CTAATGCGCGAAATGGACTAA
          1 CTAATGCGCGAAATGGACTAA

              
        217 CT
          1 CT

        219 TAACATGAGC


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   23  1.00

ACGTcount: A:0.36, C:0.20, G:0.23, T:0.20


Consensus pattern (21 bp):   
CTAATGCGCGAAATGGACTAA
Done.