Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004015.1 Corchorus capsularis cultivar CVL-1 contig04023, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 660

Length: 1100
ACGTcount: A:0.34, C:0.16, G:0.14, T:0.37


Found at i:500 original size:30 final size:29

Alignment explanation


    Indices: 444--500  Score: 69
    Period size: 30  Copynumber: 1.9  Consensus size: 29

        434 ATTGCAAATA

                   *      *      *       
        444 TTTTAAGTACATGGTAAAAGTGTAAATCT
          1 TTTTAAGGACATGGCAAAAGTATAAATCT

                                *       
        473 TTTTAGAGGACATGGCAAAATTATAAAT
          1 TTTTA-AGGACATGGCAAAAGTATAAAT

        501 TTTCACCTAC


Statistics
Matches: 23,  Mismatches: 4, Indels: 1
        0.82            0.14        0.04

Matches are distributed among these distances:
  29    5  0.22
  30   18  0.78

ACGTcount: A:0.40, C:0.07, G:0.18, T:0.35


Consensus pattern (29 bp):   
TTTTAAGGACATGGCAAAAGTATAAATCT
Done.