Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000402.1 Corchorus capsularis cultivar CVL-1 contig00402, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7809
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31


Found at i:700 original size:16 final size:17

Alignment explanation


    Indices: 510--692  Score: 244
    Period size: 17  Copynumber: 10.9  Consensus size: 17

        500 CACCCAATAT

                             
        510 AAATACTCACCTGGTAC
          1 AAATACTCACCTGGTAC

               *             
        527 AAACACTCACCTGGTAC
          1 AAATACTCACCTGGTAC

               *       **   *
        544 AAACACTCACCCAGTAT
          1 AAATACTCACCTGGTAC

                       *     
        561 AAATACTCACCCGGTAC
          1 AAATACTCACCTGGTAC

               *             
        578 AAACACTCACCTGGTAC
          1 AAATACTCACCTGGTAC

                             
        595 AAATACTCACCTGGTAC
          1 AAATACTCACCTGGTAC

               *             
        612 AAACACTCACCTGGTAC
          1 AAATACTCACCTGGTAC

                             
        629 AAATACTCACCTGGTAC
          1 AAATACTCACCTGGTAC

               *           * 
        646 AAACACTCACCTGGTGC
          1 AAATACTCACCTGGTAC

                *          * 
        663 -AATGCTCACCTGGTGC
          1 AAATACTCACCTGGTAC

                           
        679 -AATACTCACCTGGT
          1 AAATACTCACCTGGT

        693 GAGATACTTA


Statistics
Matches: 149,  Mismatches: 17, Indels: 1
        0.89            0.10        0.01

Matches are distributed among these distances:
  16   27  0.18
  17  122  0.82

ACGTcount: A:0.33, C:0.33, G:0.13, T:0.21


Consensus pattern (17 bp):   
AAATACTCACCTGGTAC
Done.