Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01004023.1 Corchorus capsularis cultivar CVL-1 contig04031, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  9292

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
357--410
27
2.0
27
82
7
65
1
12
9
75
1.11
810--839
15
2.0
15
100
0
60
26
6
33
33
1.83
1066--1147
43
1.9
43
87
5
121
48
14
15
20
1.80
1279--1447
48
3.5
48
78
1
205
39
17
25
17
1.91
1279--1481
95
2.1
95
97
0
379
37
16
26
19
1.93
1322--1480
47
3.4
47
78
1
201
35
16
26
20
1.94
1599--1735
70
1.9
71
86
4
197
32
18
24
24
1.97
1825--2179
102
3.4
105
86
3
493
31
16
24
27
1.96
1799--2179
105
3.7
104
85
4
493
31
16
24
27
1.96
2542--2693
53
2.9
53
81
4
191
36
20
16
26
1.94
5546--5589
14
3.2
13
81
9
52
34
13
6
45
1.70
5562--5597
15
2.5
14
90
4
54
38
13
8
38
1.75

Tables:   1

The End!