Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01000403.1 Corchorus capsularis cultivar CVL-1 contig00403, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6073

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
134--352
50
4.4
50
80
7
212
40
5
18
35
1.74
1230--1371
55
2.6
55
90
0
221
51
7
16
24
1.69
1651--1982
21
15.2
21
72
15
205
53
6
20
18
1.66
1680--1772
14
6.7
13
70
11
51
54
4
20
20
1.61
1651--1872
42
5.2
41
81
8
230
54
5
20
18
1.63
1693--1869
64
2.8
64
83
7
209
54
6
20
18
1.65
2797--2840
18
2.3
20
80
7
56
38
4
11
45
1.61
3302--3591
49
5.9
49
82
5
336
21
29
16
32
1.96
4163--4291
63
2.1
62
92
1
213
41
14
12
31
1.83
5967--6008
21
2.0
21
95
0
75
23
30
33
11
1.91
5988--6071
33
2.5
33
86
3
116
21
36
29
11
1.89

Tables:   1

The End!