Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004030.1 Corchorus capsularis cultivar CVL-1 contig04038, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 849

Length: 1415
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.36


Found at i:210 original size:13 final size:13

Alignment explanation


    Indices: 192--225  Score: 59
    Period size: 13  Copynumber: 2.6  Consensus size: 13

        182 TAATTATTGT

                         
        192 TTGCTTTATTAAA
          1 TTGCTTTATTAAA

                        *
        205 TTGCTTTATTAAT
          1 TTGCTTTATTAAA

                    
        218 TTGCTTTA
          1 TTGCTTTA

        226 GATTTAGATT


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  13   20  1.00

ACGTcount: A:0.24, C:0.09, G:0.09, T:0.59


Consensus pattern (13 bp):   
TTGCTTTATTAAA

Found at i:233 original size:6 final size:6

Alignment explanation


    Indices: 222--248  Score: 54
    Period size: 6  Copynumber: 4.5  Consensus size: 6

        212 ATTAATTTGC

                                           
        222 TTTAGA TTTAGA TTTAGA TTTAGA TTT
          1 TTTAGA TTTAGA TTTAGA TTTAGA TTT

        249 GCTTTGCTTT


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   21  1.00

ACGTcount: A:0.30, C:0.00, G:0.15, T:0.56


Consensus pattern (6 bp):   
TTTAGA

Done.