Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004040.1 Corchorus capsularis cultivar CVL-1 contig04048, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 620

Length: 1034
ACGTcount: A:0.37, C:0.17, G:0.21, T:0.25


Found at i:304 original size:7 final size:7

Alignment explanation


    Indices: 292--326  Score: 52
    Period size: 7  Copynumber: 4.7  Consensus size: 7

        282 CAGGGGAAGT

                   
        292 CAAGAAA
          1 CAAGAAA

                   
        299 CAAGAAA
          1 CAAGAAA

                    
        306 CAAGAAAA
          1 CAAG-AAA

                    
        314 TCAAGAAA
          1 -CAAGAAA

                 
        322 CAAGA
          1 CAAGA

        327 GAAGGTATCG


Statistics
Matches: 26,  Mismatches: 0, Indels: 4
        0.87            0.00        0.13

Matches are distributed among these distances:
   7   16  0.62
   8    6  0.23
   9    4  0.15

ACGTcount: A:0.69, C:0.14, G:0.14, T:0.03


Consensus pattern (7 bp):   
CAAGAAA
Done.