Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004050.1 Corchorus capsularis cultivar CVL-1 contig04058, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1883
ACGTcount: A:0.35, C:0.15, G:0.12, T:0.38


Found at i:1075 original size:11 final size:11

Alignment explanation


    Indices: 1032--1069  Score: 51
    Period size: 11  Copynumber: 3.5  Consensus size: 11

       1022 CCTATATATA

                *      
       1032 AAATAAATTAT
          1 AAATTAATTAT

                        
       1043 GAAA-TAATTAT
          1 -AAATTAATTAT

                       
       1054 AAATTAATTAT
          1 AAATTAATTAT

                 
       1065 AAATT
          1 AAATT

       1070 TGTTATGAAT


Statistics
Matches: 24,  Mismatches: 1, Indels: 3
        0.86            0.04        0.11

Matches are distributed among these distances:
  10    3  0.12
  11   18  0.75
  12    3  0.12

ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39


Consensus pattern (11 bp):   
AAATTAATTAT

Found at i:1659 original size:2 final size:2

Alignment explanation


    Indices: 1652--1692  Score: 68
    Period size: 2  Copynumber: 21.5  Consensus size: 2

       1642 ATTAATATTC

                                                                          
       1652 AT AT AT AT AT AT AT AT -T AT AT AT AT -T AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

             
       1692 A
          1 A

       1693 CACACATACA


Statistics
Matches: 37,  Mismatches: 0, Indels: 4
        0.90            0.00        0.10

Matches are distributed among these distances:
   1    2  0.05
   2   35  0.95

ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51


Consensus pattern (2 bp):   
AT

Done.