Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004051.1 Corchorus capsularis cultivar CVL-1 contig04059, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3007
ACGTcount: A:0.36, C:0.17, G:0.14, T:0.32


Found at i:2803 original size:6 final size:6

Alignment explanation


    Indices: 2792--2857  Score: 109
    Period size: 6  Copynumber: 11.3  Consensus size: 6

       2782 ATTAGATTTA

                            *                                      
       2792 ATCTAT ATCTAT ATATAT ATCTAT ATCTAT ATCTAT ATCTAT ATCTAT
          1 ATCTAT ATCTAT ATCTAT ATCTAT ATCTAT ATCTAT ATCTAT ATCTAT

                                   
       2840 A-CTAT ATCTAT A-CTAT AT
          1 ATCTAT ATCTAT ATCTAT AT

       2858 TAAAAAGTAC


Statistics
Matches: 56,  Mismatches: 2, Indels: 4
        0.90            0.03        0.06

Matches are distributed among these distances:
   5   10  0.18
   6   46  0.82

ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48


Consensus pattern (6 bp):   
ATCTAT

Done.