Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004053.1 Corchorus capsularis cultivar CVL-1 contig04061, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 668

Length: 1114
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.35


Found at i:980 original size:2 final size:2

Alignment explanation


    Indices: 973--1006  Score: 59
    Period size: 2  Copynumber: 17.0  Consensus size: 2

        963 ATTTTGTTAG

                                                       *      
        973 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AA AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

       1007 TTCAATAAGT


Statistics
Matches: 30,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   2   30  1.00

ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47


Consensus pattern (2 bp):   
AT

Done.