Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004062.1 Corchorus capsularis cultivar CVL-1 contig04070, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 651

Length: 1086
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.32


Found at i:611 original size:58 final size:58

Alignment explanation


    Indices: 516--737  Score: 189
    Period size: 58  Copynumber: 3.7  Consensus size: 58

        506 ATTTAGAATG

                    **           *          *                   **    
        516 AAACTCTCGGCTAGAGACCTCAAGCAGGATTTAAAAATGAAACAAGATTTTGGTTTGA
          1 AAACTCTCAACTAGAGACCTCGAGCAGGATTTGAAAATGAAACAAGATTTTGAATTGA

                      *       *     *                       *  *       
        574 AAACTCTCAATTAGAGACTTCGAGTAGGATTTGAAAATGAAAC-AGAACTTAGAATTGA
          1 AAACTCTCAACTAGAGACCTCGAGCAGGATTTGAAAATGAAACAAG-ATTTTGAATTGA

            *       *                                   *                   
        632 TAACTCTCGACTAGAGACCTCGAGCAGGATTTG-AAATG-AACATGATTTTTGAATTGAAACAA
          1 AAACTCTCAACTAGAGACCTCGAGCAGGATTTGAAAATGAAACAAGA-TTTTGAATTG-----A

                     *            *          * *        
        694 GAAACTCTCGACTAGAGACCTCAAGCAGGATTTTAGAATGAAAC
          1 -AAACTCTCAACTAGAGACCTCGAGCAGGATTTGAAAATGAAAC

        738 TCTCAAATAG


Statistics
Matches: 130,  Mismatches: 23, Indels: 15
        0.77            0.14        0.09

Matches are distributed among these distances:
  56    4  0.03
  57   16  0.12
  58   72  0.55
  62    1  0.01
  63   30  0.23
  64    4  0.03
  65    3  0.02

ACGTcount: A:0.39, C:0.16, G:0.20, T:0.25


Consensus pattern (58 bp):   
AAACTCTCAACTAGAGACCTCGAGCAGGATTTGAAAATGAAACAAGATTTTGAATTGA
Done.