Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004066.1 Corchorus capsularis cultivar CVL-1 contig04074, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 603

Length: 1005
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.34


Found at i:816 original size:13 final size:13

Alignment explanation


    Indices: 798--824  Score: 54
    Period size: 13  Copynumber: 2.1  Consensus size: 13

        788 CACCATACAT

                         
        798 ATTGAATTGAAGG
          1 ATTGAATTGAAGG

                         
        811 ATTGAATTGAAGG
          1 ATTGAATTGAAGG

             
        824 A
          1 A

        825 ATCCGGTGAC


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   14  1.00

ACGTcount: A:0.41, C:0.00, G:0.30, T:0.30


Consensus pattern (13 bp):   
ATTGAATTGAAGG
Done.