Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004069.1 Corchorus capsularis cultivar CVL-1 contig04077, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 716

Length: 1194
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.29


Found at i:111 original size:22 final size:21

Alignment explanation


    Indices: 67--111  Score: 56
    Period size: 22  Copynumber: 2.1  Consensus size: 21

         57 GCTAAAAGGG

                             *   
         67 AGGGGAAAGGAAAAAGATAAA
          1 AGGGGAAAGGAAAAAGACAAA

                                   
         88 AGGGGAAAAGGAAAAA-ACAGAA
          1 AGGGG-AAAGGAAAAAGACA-AA

              
        110 AG
          1 AG

        112 AAAGGAGGGA


Statistics
Matches: 21,  Mismatches: 1, Indels: 3
        0.84            0.04        0.12

Matches are distributed among these distances:
  21    7  0.33
  22   14  0.67

ACGTcount: A:0.62, C:0.02, G:0.33, T:0.02


Consensus pattern (21 bp):   
AGGGGAAAGGAAAAAGACAAA
Done.