Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004071.1 Corchorus capsularis cultivar CVL-1 contig04079, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 869

Length: 1449
ACGTcount: A:0.39, C:0.17, G:0.14, T:0.30


Found at i:1365 original size:67 final size:67

Alignment explanation


    Indices: 1289--1435  Score: 285
    Period size: 67  Copynumber: 2.2  Consensus size: 67

       1279 ACTACCAAAC

                                                                             
       1289 AAAGCAACTAAACTAATAATATAGCACAAAAGATAACACAAGTATAAACACCAAAATTTTAAACA
          1 AAAGCAACTAAACTAATAATATAGCACAAAAGATAACACAAGTATAAACACCAAAATTTTAAACA

              
       1354 GA
         66 GA

                                                                             
       1356 AAAGCAACTAAACTAATAATATAGCACAAAAGATAACACAAGTATAAACACCAAAATTTTAAACA
          1 AAAGCAACTAAACTAATAATATAGCACAAAAGATAACACAAGTATAAACACCAAAATTTTAAACA

              
       1421 GA
         66 GA

                    *    
       1423 AAAGCAACAAAAC
          1 AAAGCAACTAAAC

       1436 ACACAAAAAA


Statistics
Matches: 79,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
  67   79  1.00

ACGTcount: A:0.59, C:0.17, G:0.07, T:0.16


Consensus pattern (67 bp):   
AAAGCAACTAAACTAATAATATAGCACAAAAGATAACACAAGTATAAACACCAAAATTTTAAACA
GA
Done.