Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004074.1 Corchorus capsularis cultivar CVL-1 contig04082, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2135
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.33


Found at i:1720 original size:12 final size:12

Alignment explanation


    Indices: 1705--1734  Score: 53
    Period size: 12  Copynumber: 2.6  Consensus size: 12

       1695 TATGAATTAT

                        
       1705 ATTATAAGTATA
          1 ATTATAAGTATA

                        
       1717 ATTATAAGTATA
          1 ATTATAAGTATA

                   
       1729 A-TATAA
          1 ATTATAA

       1735 TAATAAATTT


Statistics
Matches: 18,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  11    5  0.28
  12   13  0.72

ACGTcount: A:0.53, C:0.00, G:0.07, T:0.40


Consensus pattern (12 bp):   
ATTATAAGTATA

Found at i:1721 original size:17 final size:17

Alignment explanation


    Indices: 1707--1740  Score: 50
    Period size: 17  Copynumber: 1.9  Consensus size: 17

       1697 TGAATTATAT

                              
       1707 TATAAGTATAATTATAAG
          1 TATAA-TATAATTATAAG

                       *    
       1725 TATAATATAATAATAA
          1 TATAATATAATTATAA

       1741 ATTTAATTTC


Statistics
Matches: 15,  Mismatches: 1, Indels: 1
        0.88            0.06        0.06

Matches are distributed among these distances:
  17   10  0.67
  18    5  0.33

ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38


Consensus pattern (17 bp):   
TATAATATAATTATAAG
Done.