Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004079.1 Corchorus capsularis cultivar CVL-1 contig04087, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1703
ACGTcount: A:0.35, C:0.13, G:0.14, T:0.38


Found at i:517 original size:2 final size:2

Alignment explanation


    Indices: 510--537  Score: 56
    Period size: 2  Copynumber: 14.0  Consensus size: 2

        500 CCAGAACAAA

                                                     
        510 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT

        538 GAATGAGATA


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   26  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Done.