Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004080.1 Corchorus capsularis cultivar CVL-1 contig04088, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 974

Length: 1624
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.34


Found at i:942 original size:22 final size:22

Alignment explanation


    Indices: 917--967  Score: 93
    Period size: 22  Copynumber: 2.3  Consensus size: 22

        907 TCAGTAAATA

                                  
        917 TGATGCAGTAATGATTCAGCCT
          1 TGATGCAGTAATGATTCAGCCT

                               *  
        939 TGATGCAGTAATGATTCAGTCT
          1 TGATGCAGTAATGATTCAGCCT

                   
        961 TGATGCA
          1 TGATGCA

        968 ACATTGTTAA


Statistics
Matches: 28,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  22   28  1.00

ACGTcount: A:0.27, C:0.16, G:0.24, T:0.33


Consensus pattern (22 bp):   
TGATGCAGTAATGATTCAGCCT
Done.