Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004088.1 Corchorus capsularis cultivar CVL-1 contig04096, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 811

Length: 1353
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.39


Found at i:246 original size:31 final size:31

Alignment explanation


    Indices: 198--257  Score: 102
    Period size: 31  Copynumber: 1.9  Consensus size: 31

        188 TTTGAGAAAC

                *                          
        198 TTTTGAAATACCCATTATATCCTTATTTAAT
          1 TTTTAAAATACCCATTATATCCTTATTTAAT

                        *                
        229 TTTTAAAATACCTATTATATCCTTATTTA
          1 TTTTAAAATACCCATTATATCCTTATTTA

        258 TTTAACTTAT


Statistics
Matches: 27,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  31   27  1.00

ACGTcount: A:0.33, C:0.15, G:0.02, T:0.50


Consensus pattern (31 bp):   
TTTTAAAATACCCATTATATCCTTATTTAAT

Found at i:1059 original size:2 final size:2

Alignment explanation


    Indices: 1052--1087  Score: 63
    Period size: 2  Copynumber: 18.0  Consensus size: 2

       1042 TTCTAAATTC

                                                   *             
       1052 AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

       1088 TCCATCAGTG


Statistics
Matches: 32,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   2   32  1.00

ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53


Consensus pattern (2 bp):   
AT

Done.