Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004095.1 Corchorus capsularis cultivar CVL-1 contig04103, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 604

Length: 1007
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.33


Found at i:572 original size:16 final size:16

Alignment explanation


    Indices: 548--579  Score: 55
    Period size: 16  Copynumber: 2.0  Consensus size: 16

        538 GGAATGATAG

                *           
        548 GTTTTAATCAAAGCAT
          1 GTTTCAATCAAAGCAT

                            
        564 GTTTCAATCAAAGCAT
          1 GTTTCAATCAAAGCAT

        580 TGATTTCGAG


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  16   15  1.00

ACGTcount: A:0.38, C:0.16, G:0.12, T:0.34


Consensus pattern (16 bp):   
GTTTCAATCAAAGCAT
Done.