Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004096.1 Corchorus capsularis cultivar CVL-1 contig04104, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 625

Length: 1042
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26


Found at i:716 original size:21 final size:21

Alignment explanation


    Indices: 691--737  Score: 67
    Period size: 21  Copynumber: 2.2  Consensus size: 21

        681 GCTGGGCGCT

                        * *   *  
        691 CATGTGGTTTGCTTGGCGCCC
          1 CATGTGGTTTGCCTCGCGACC

                                 
        712 CATGTGGTTTGCCTCGCGACC
          1 CATGTGGTTTGCCTCGCGACC

                 
        733 CATGT
          1 CATGT

        738 ACTCCAGTGC


Statistics
Matches: 23,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  21   23  1.00

ACGTcount: A:0.09, C:0.30, G:0.30, T:0.32


Consensus pattern (21 bp):   
CATGTGGTTTGCCTCGCGACC
Done.