Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004099.1 Corchorus capsularis cultivar CVL-1 contig04107, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 836

Length: 1394
ACGTcount: A:0.34, C:0.16, G:0.22, T:0.29


Found at i:796 original size:36 final size:36

Alignment explanation


    Indices: 749--822  Score: 148
    Period size: 36  Copynumber: 2.1  Consensus size: 36

        739 ATACCATTCT

                                                
        749 CCCTCATGCATAACGTAACTGAGCTTTACAACTAAA
          1 CCCTCATGCATAACGTAACTGAGCTTTACAACTAAA

                                                
        785 CCCTCATGCATAACGTAACTGAGCTTTACAACTAAA
          1 CCCTCATGCATAACGTAACTGAGCTTTACAACTAAA

              
        821 CC
          1 CC

        823 ATTACCAAGA


Statistics
Matches: 38,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  36   38  1.00

ACGTcount: A:0.35, C:0.30, G:0.11, T:0.24


Consensus pattern (36 bp):   
CCCTCATGCATAACGTAACTGAGCTTTACAACTAAA
Done.