Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004103.1 Corchorus capsularis cultivar CVL-1 contig04111, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 753

Length: 1256
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31


Found at i:953 original size:2 final size:2

Alignment explanation


    Indices: 948--981  Score: 61
    Period size: 2  Copynumber: 17.5  Consensus size: 2

        938 AAAACTTGAT

                                                                
        948 TA TA TA TA TA TA TA TA TA T- TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

        982 TGATGTTGTT


Statistics
Matches: 31,  Mismatches: 0, Indels: 2
        0.94            0.00        0.06

Matches are distributed among these distances:
   1    1  0.03
   2   30  0.97

ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53


Consensus pattern (2 bp):   
TA

Done.