Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004105.1 Corchorus capsularis cultivar CVL-1 contig04113, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5890
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34


Found at i:5488 original size:12 final size:12

Alignment explanation


    Indices: 5471--5495  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

       5461 CCTAGATCAA

                        
       5471 TTTTTTTAAAAT
          1 TTTTTTTAAAAT

                        
       5483 TTTTTTTAAAAT
          1 TTTTTTTAAAAT

             
       5495 T
          1 T

       5496 ATGATTTTTT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68


Consensus pattern (12 bp):   
TTTTTTTAAAAT
Done.