Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000411.1 Corchorus capsularis cultivar CVL-1 contig00411, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 707

Length: 1179
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.35


Found at i:376 original size:3 final size:3

Alignment explanation


    Indices: 316--361  Score: 67
    Period size: 3  Copynumber: 15.7  Consensus size: 3

        306 TGATATTGTA

                     *                                   *                
        316 ATT ATT ACT ATT A-T ATT ATT ATT ATT ATT ATT ACT ATT ATT ATT AT
          1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT

        362 AGGAGTATAT


Statistics
Matches: 38,  Mismatches: 4, Indels: 2
        0.86            0.09        0.05

Matches are distributed among these distances:
   2    2  0.05
   3   36  0.95

ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61


Consensus pattern (3 bp):   
ATT

Found at i:666 original size:11 final size:11

Alignment explanation


    Indices: 650--676  Score: 54
    Period size: 11  Copynumber: 2.5  Consensus size: 11

        640 TCATAATCAA

                       
        650 TTATTATTTAT
          1 TTATTATTTAT

                       
        661 TTATTATTTAT
          1 TTATTATTTAT

                 
        672 TTATT
          1 TTATT

        677 CCCATAGCAA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   16  1.00

ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74


Consensus pattern (11 bp):   
TTATTATTTAT
Done.