Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004114.1 Corchorus capsularis cultivar CVL-1 contig04122, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 802

Length: 1337
ACGTcount: A:0.42, C:0.14, G:0.12, T:0.33


Found at i:440 original size:99 final size:97

Alignment explanation


    Indices: 281--469  Score: 274
    Period size: 99  Copynumber: 1.9  Consensus size: 97

        271 CAACTAAGTA

                                                                             
        281 ACTTTAATTGGAATTATTATTTGAATGTAATGTATGTATATATAACAATGAGGAGTTATTGAAA-
          1 ACTTTAATTGGAATTATTATTTGAATGTAATGTATGTATATATAACAATGAGGAGTTATTGAAAG

                             *               
        345 TGATAAAAAGAATTAAATACCCAATTGTAACTC
         66 T-ATAAAAAGAATTAAAGACCCAATTGTAACTC

                                      *                     **               
        378 ACTTTAATTGGAATTATTATTTGAATTTGAATGTAATGTATATATAACGGTGAGGTA-TTATTGA
          1 ACTTTAATTGGAATTATTATTTGAATGT-AATGT-ATGTATATATAACAATGAGG-AGTTATTGA

                        *        *      
        442 AAGTATAAAAAGGATTAAAGATCCAATT
         63 AAGTATAAAAAGAATTAAAGACCCAATT

        470 ATAAGTTGTA


Statistics
Matches: 82,  Mismatches: 6, Indels: 6
        0.87            0.06        0.06

Matches are distributed among these distances:
  97   27  0.33
  98    5  0.06
  99   48  0.59
 100    2  0.02

ACGTcount: A:0.41, C:0.06, G:0.16, T:0.37


Consensus pattern (97 bp):   
ACTTTAATTGGAATTATTATTTGAATGTAATGTATGTATATATAACAATGAGGAGTTATTGAAAG
TATAAAAAGAATTAAAGACCCAATTGTAACTC
Done.