Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004120.1 Corchorus capsularis cultivar CVL-1 contig04128, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7960
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.29


Found at i:6224 original size:21 final size:21

Alignment explanation


    Indices: 6199--6263  Score: 112
    Period size: 21  Copynumber: 3.1  Consensus size: 21

       6189 ATTATGTTGA

                                 
       6199 GAGTAGCTAGATTGCCTAACT
          1 GAGTAGCTAGATTGCCTAACT

                                 
       6220 GAGTAGCTAGATTGCCTAACT
          1 GAGTAGCTAGATTGCCTAACT

            *        *           
       6241 AAGTAGCTAAATTGCCTAACT
          1 GAGTAGCTAGATTGCCTAACT

              
       6262 GA
          1 GA

       6264 TGGTGTTTCA


Statistics
Matches: 41,  Mismatches: 3, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  21   41  1.00

ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28


Consensus pattern (21 bp):   
GAGTAGCTAGATTGCCTAACT
Done.