Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004127.1 Corchorus capsularis cultivar CVL-1 contig04135, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 742

Length: 1238
ACGTcount: A:0.41, C:0.10, G:0.11, T:0.37


Found at i:545 original size:139 final size:138

Alignment explanation


    Indices: 313--712  Score: 468
    Period size: 139  Copynumber: 2.9  Consensus size: 138

        303 CCAAAAGCTA

                                *                 *                          
        313 ATGATTATTTAATTTTGCCACAAATAAATGAATCAATTTGT-ATTATGTTACAAAAAAATAAATT
          1 ATGATTATTT-ATTTTGCCATAAATAAATGAATCAATTAGTAATTATGTTAC-AAAAAA-AAATT

                      * *      *                                             
        377 GATTGAACATCCAAAATAAGTAAATGAATCAAGTTAGTCCTTAGTTAACTTTGCCAATCAAAGTT
         63 GATTGAACATACTAAATAAATAAATGAATCAAGTTAGTCCTTAGTTAACTTTGCCAATCAAAGTT

                       
        442 ATAATTGATGG
        128 ATAATTGATGG

                            *            *                 *    *            
        453 ATGATTATTTATTTTTTCCATAAATAAATAAATCAATTAGTAATTATATTACCAAAAAAAATTGA
          1 ATGATTATTTA-TTTTGCCATAAATAAATGAATCAATTAGTAATTATGTTACAAAAAAAAATTGA

                *   *                          *         *       *           
        518 TTGAGCATGCTAAATAAATAAATGAATCAAGTTA-ACCGTT-GATCAACTTTGTCAATCAAAGTT
         65 TTGAACATACTAAATAAATAAATGAATCAAGTTAGTCC-TTAG-TTAACTTTGCCAATCAAAGTT

                     * 
        581 ATAATTGATTG
        128 ATAATTGATGG

                 *                           *                               
        592 ATGATAATTTGATTTTGCCATAAATAAATGAATTAATTAGTAATTATGTTAGCAAAAAAATAGAT
          1 ATGATTATTT-ATTTTGCCATAAATAAATGAATCAATTAGTAATTATGTTA-CAAAAAAA-A-AT

                                  * **       *      *   *             
        657 TGATTGAACATACTAAATAAATTAGGGAATCAAATTAGTCGTTAATTAA--TTGCCAA
         62 TGATTGAACATACTAAATAAATAAATGAATCAAGTTAGTCCTTAGTTAACTTTGCCAA

        713 AAAAAAAATT


Statistics
Matches: 219,  Mismatches: 31, Indels: 20
        0.81            0.11        0.07

Matches are distributed among these distances:
 138    3  0.01
 139  113  0.52
 140   54  0.25
 141   10  0.05
 142   38  0.17
 143    1  0.00

ACGTcount: A:0.43, C:0.10, G:0.12, T:0.35


Consensus pattern (138 bp):   
ATGATTATTTATTTTGCCATAAATAAATGAATCAATTAGTAATTATGTTACAAAAAAAAATTGAT
TGAACATACTAAATAAATAAATGAATCAAGTTAGTCCTTAGTTAACTTTGCCAATCAAAGTTATA
ATTGATGG
Done.