Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004131.1 Corchorus capsularis cultivar CVL-1 contig04139, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 694

Length: 1157
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.27


Found at i:870 original size:13 final size:13

Alignment explanation


    Indices: 852--886  Score: 61
    Period size: 13  Copynumber: 2.7  Consensus size: 13

        842 AGCCATGGCG

                         
        852 GGATCTCAGGTAC
          1 GGATCTCAGGTAC

                         
        865 GGATCTCAGGTAC
          1 GGATCTCAGGTAC

             *       
        878 GTATCTCAG
          1 GGATCTCAG

        887 AGACAGATCA


Statistics
Matches: 21,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  13   21  1.00

ACGTcount: A:0.23, C:0.23, G:0.29, T:0.26


Consensus pattern (13 bp):   
GGATCTCAGGTAC
Done.