Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004140.1 Corchorus capsularis cultivar CVL-1 contig04148, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 601

Length: 1003
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.32


Found at i:135 original size:23 final size:23

Alignment explanation


    Indices: 109--154  Score: 92
    Period size: 23  Copynumber: 2.0  Consensus size: 23

         99 AATCCTTTAT

                                   
        109 TTTTTTTTTTAGATTTACTTAGA
          1 TTTTTTTTTTAGATTTACTTAGA

                                   
        132 TTTTTTTTTTAGATTTACTTAGA
          1 TTTTTTTTTTAGATTTACTTAGA

        155 ATAGAAAACT


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   23  1.00

ACGTcount: A:0.22, C:0.04, G:0.09, T:0.65


Consensus pattern (23 bp):   
TTTTTTTTTTAGATTTACTTAGA
Done.