Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01000415.1 Corchorus capsularis cultivar CVL-1 contig00415, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6792

Tables:   1   

This is table  1  of  1  ( 8 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
411--539
23
5.6
23
81
4
127
39
8
13
37
1.76
410--539
45
2.8
44
82
7
152
39
8
14
37
1.77
244--718
22
21.7
21
69
14
180
37
10
15
36
1.82
175--809
44
14.6
44
67
14
216
39
9
15
35
1.80
922--972
3
16.3
3
92
8
68
60
0
0
39
0.97
2386--2506
63
2.0
59
84
12
156
32
23
6
38
1.80
4145--4169
2
12.5
2
100
0
50
52
0
0
48
1.00
5641--5754
58
2.0
58
89
1
176
34
12
21
32
1.90

Tables:   1

The End!